Payroll in Australia is not simple. You have Single Touch Payroll reporting to the ATO, superannuation obligations with strict payment deadlines, award rates that change every July, leave entitlements under the National Employment Standards, and PAYG withholding calculations. Getting any of these wrong can result in penalties from the ATO or Fair Work Australia.

The good news is that AI-powered payroll tools handle most of this automatically. They calculate the right tax to withhold, apply the correct super rate, report to the ATO via STP, and remind you when super is due. For a small business with two to fifteen employees, these tools are genuinely transformative.

What to Look for in Australian Payroll Software

The non-negotiable features for Australian payroll are Single Touch Payroll Phase 2 compliance, automatic superannuation calculation and reporting to your chosen clearing house, leave balance tracking under the National Employment Standards, and support for the award or enterprise agreement that covers your employees. Tools that do not handle these things natively will create more work rather than less.

KeyPay (now Employment Hero Payroll)

KeyPay, which now operates under the Employment Hero brand, is widely considered the most powerful payroll platform for Australian small and medium businesses. Its AI-powered award interpretation engine handles over 100 modern awards, automatically calculating ordinary time, overtime, penalty rates, and allowances based on the hours your employees work.

This award automation is the feature that saves the most time. If you employ hospitality workers, retail staff, or anyone else on a modern award, calculating their weekly pay manually is genuinely complex. KeyPay does it automatically when you enter the hours. The STP reporting to the ATO is seamless, and super is calculated and sent to the clearing house automatically.

Pricing is per employee per month, starting at around $6 AUD per employee. For a small team, this is very reasonable given the compliance risk it removes.

MYOB Business Payroll

MYOB has deep roots in Australian small business and their payroll module reflects this. It handles STP, super, and leave entitlements well, and the integration with their accounting module means your payroll journals post automatically. If you are already using MYOB for bookkeeping, adding payroll is a natural extension.

The AI features in MYOB Payroll are more limited than KeyPay's award interpretation engine. For businesses on straightforward salaries or a simple award, this is fine. For complex award calculations, it is less capable.

Xero Payroll

Xero Payroll is included in their higher-tier plans and works seamlessly with the Xero accounting ecosystem. It handles STP Phase 2, superannuation, and leave tracking well. The payroll run process is straightforward, and the reporting is clean. For businesses already on Xero, it is the most convenient option.

Like MYOB, Xero Payroll is less sophisticated than KeyPay for complex award calculations. Xero has a partnership with KeyPay for businesses that need that capability, allowing the two systems to work together.

Employment Hero HR and Payroll

Employment Hero offers a combined HR and payroll platform that is well suited to businesses that want to manage onboarding, contracts, leave requests, and payroll in one system. The AI-powered features include automated reminders for compliance tasks, suggested pay run adjustments based on leave taken, and onboarding workflows that automatically set up the employee's tax file number declaration and super choice.

For businesses that are growing and finding HR administration time-consuming, Employment Hero is worth considering. Pricing scales with your team size and the features you need.

Superannuation: The One That Catches People Out

Super is the obligation that most commonly creates problems for small business employers. The rate is currently 11.5% of ordinary time earnings and increases to 12% in 2025. Payments must be made at least quarterly to the employee's chosen super fund, and missing the deadline results in the Super Guarantee Charge, which is not tax-deductible.

Every tool mentioned here calculates and pays super automatically, connecting to ATO-approved clearing houses to distribute payments to the right funds. If you are currently calculating super manually, switching to even the simplest payroll tool will eliminate this compliance risk.

First employee coming on board?

Before you run your first payroll, check which modern award applies to your industry via the Fair Work Commission website, and set up a business super account with a clearing house. The tools above handle the rest from there.